Really important topic. I believe the religious discrimination protection could reasonably be applied to their religious programs - but not to a nursing program, and certainly not with my gay tax dollars! Would it be funny to start a campaign that these universities take money from gays, (in the form of tax dollars)?
I also believe the solution for schools like this is to push them into obscurity and obsolescence. The Boy Scouts were headed there - and they changed their position on gays rather than disappear.
I graduated from a conservative Christian school that's anti-LGBT, and I have to wonder how many jobs I'm not getting as a result of it - their values simply don't transfer to most employers today.